Novel data analysis approaches for cancer biomarker discovery

John Timms (primary)
Institute for Women's Health
University College London
Alexey Zaikin (secondary)
Mathematics
University College London

Abstract

The project brings together expertise in tumour biomarkers, proteomics and mathematics. It will devise novel approaches to analyse data from pre-diagnosis serum measurements of multiple proteins in several cancer types. The major aim is the generation of improved biomarker models for early detection. This will be achieved by applying novel network analysis approaches to new and existing datasets that consider all measurements and longitudinal modelling of serial data. Further work will validate the biomarker models. The project will also explore interactions of serum analytes from a systems biology perspective, assessing the role of multiple protein changes during cancer progression.


References

  1. O’Brien et al. Clinical Cancer Research 21, 622 (2014) doi:10.1158/1078-0432.CCR-14-0365
  2. Timms et al. Proteomics Clinical Applications 8, 982-93 (2014) doi:10.1002/prca.201400063
  3. Thomas DS et al Br J Cancer. 2015 Jul 14;113(2):268-74. doi: 10.1038/bjc.2015.202
  4. Zanin et al. Scientific Reports 4, srep05112 (2014) doi:10.1038/srep05112
  5. Menon et al. J Clin Oncol. 2015 Jun 20;33(18):2062-71. doi: 10.1200/JCO.2014.59.4945

BBSRC Area
Molecules, cells and industrial biotechnology
Area of Biology
AgeingPhysiology
Techniques & Approaches
BiochemistryBioinformaticsMathematics / StatisticsSimulation / Modelling